DOSim: Disease Analysis toolkit for gene set; Computation of similarities between DO terms and disease similarity between gene products; Module detection among the gene set and multilayer annotation for each module

This package implements multiple similarity measures for DO terms and gene products. It is aiming at disease analyis for gene sets. Modules of a gene set could be detected and further multilayer annoated on DO, GO and KEGG. We also provides users to conduct DO enrichment analysis and basic information fetching for DO.DOSim: An R package for similarity between diseases based on Disease Ontology(http://www.biomedcentral.com/1471-2105/12/266)

Version: 2.2
Depends: R (≥ 2.10), GOSim, dynamicTreeCut, moduleColor, RBGL, graph, Rgraphviz
Published: 2012-02-13
Author: Jiang Li
Maintainer: Jiang Li <riverlee2008 at gmail.com>
License: GPL (≥ 2)
URL: http://bioinfo.hrbmu.edu.cn/dosim/
CRAN checks: DOSim results

Downloads:

Package source: DOSim_2.2.tar.gz
MacOS X binary: not available, see check log.
Windows binary: DOSim_2.2.zip
Reference manual: DOSim.pdf
Vignettes: DOSim Overview
Old sources: DOSim archive